Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs9862221 chr3:10059658 G/T 0.000134 128 39.38 60.63 17.1 KM Plot
TGCT rs9956241 chr18:32794100 T/C 1.68E-5 132 21.43 27.1 50.45 KM Plot
TGCT rs9967514 chr18:32794568 A/T 1.68E-5 132 21.43 27.1 50.45 KM Plot
TGCT rs9971652 chr12:107094333 A/C 0.000124 132 42.18 45.1 28.8 KM Plot
TGCT rs9971765 chr12:107092299 G/A 5.59E-5 133 44.52 45.1 28.67 KM Plot
THCA rs10033163 chr4:1095422 G/A 5.25E-5 494 31.47 33.5 36.43 KM Plot
THCA rs10064753 chr5:1949516 A/G 1.91E-8 503 30.4 26.57 31.77 KM Plot
THCA rs10074172 chr5:1949753 T/C 2.66E-15 501 31.77 26.18 18.12 KM Plot
THCA rs10091892 chr8:60158348 T/A 0.000111 497 31.73 30.13 20.5 KM Plot
THCA rs10098046 chr8:144617923 G/A 5.08E-5 489 31.47 30.53 32.87 KM Plot
THCA rs10104402 chr8:144571600 G/A 6.19E-7 492 31.7 30.92 21.93 KM Plot
THCA rs10105938 chr8:8356261 T/C 1.15E-5 479 33.1 29.9 25.03 KM Plot
THCA rs10109164 chr8:58100849 G/A 0.000123 503 31.15 38.77 32.9 KM Plot
THCA rs10131 chr13:108859846 C/T 2.4E-6 495 31.45 31.72 24.63 KM Plot
THCA rs1015091 chr1:41518041 C/G 1.36E-7 499 27.33 30.48 31.93 KM Plot